MRIQC: individual T1w report

Summary

Subject ID: 017_ControlPre.
Date and time: 2018-05-06, 23:49.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.266335712324565
cnr			4.31804083399006
efc			0.589942853769926
fber			108.29917907714844
fwhm	avg		3.83091
fwhm	x		3.58979
fwhm	y		4.15283
fwhm	z		3.75011
icvs	csf		0.19813602692354929
icvs	gm		0.466639289098557
icvs	wm		0.3352246839778937
inu	med		0.9931334257125854
inu	range		0.3183633357286455
qi	1		0.0
qi	2		0.0006820328643303327
rpve	csf		22.37687695166574
rpve	gm		10.689375078981037
rpve	wm		17.123576995498176
size	x		180
size	y		256
size	z		256
snr	csf		2.3816590606189902
snr	gm		10.386326755768625
snr	total		8.99236053552906
snr	wm		14.209095790199566
snrd	csf		14.350519278665631
snrd	gm		29.61852002942689
snrd	total		31.06019152598724
snrd	wm		49.2115352698692
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.0332292745151985
summary	bg	mad	13.312738418579102
summary	bg	mean	47.264923095703125
summary	bg	median	46.012290954589844
summary	bg	n	2777299.0
summary	bg	p05	27.510950660705564
summary	bg	p95	71.43453521728516
summary	bg	stdv	13.809713363647461
summary	csf	k	-0.26295680117931974
summary	csf	mad	146.07156372070312
summary	csf	mean	289.8341064453125
summary	csf	median	291.610595703125
summary	csf	n	12737.0
summary	csf	p05	111.39846343994141
summary	csf	p95	485.38677978515625
summary	csf	stdv	122.435302734375
summary	gm	k	0.04547241649651568
summary	gm	mad	57.58919906616211
summary	gm	mean	602.7405395507812
summary	gm	median	601.8649291992188
summary	gm	n	41121.0
summary	gm	p05	508.4110412597656
summary	gm	p95	698.8953857421875
summary	gm	stdv	57.94710922241211
summary	wm	k	1.5023165719867944
summary	wm	mad	48.449981689453125
summary	wm	mean	986.1085205078125
summary	wm	median	1000.0059814453125
summary	wm	n	192486.0
summary	wm	p05	831.1702423095703
summary	wm	p95	1074.0186767578125
summary	wm	stdv	70.37769317626953
tpm	overlap	csf	0.19485361874103546
tpm	overlap	gm	0.5110290050506592
tpm	overlap	wm	0.5083010792732239
wm2max			0.614719678166579

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	e774cb43bdcec806588c0d652c41118c
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.