MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.266335712324565
cnr4.31804083399006
efc0.589942853769926
fber108.29917907714844
fwhmavg3.83091
fwhmx3.58979
fwhmy4.15283
fwhmz3.75011
icvscsf0.19813602692354929
icvsgm0.466639289098557
icvswm0.3352246839778937
inumed0.9931334257125854
inurange0.3183633357286455
qi10.0
qi20.0006820328643303327
rpvecsf22.37687695166574
rpvegm10.689375078981037
rpvewm17.123576995498176
sizex180
sizey256
sizez256
snrcsf2.3816590606189902
snrgm10.386326755768625
snrtotal8.99236053552906
snrwm14.209095790199566
snrdcsf14.350519278665631
snrdgm29.61852002942689
snrdtotal31.06019152598724
snrdwm49.2115352698692
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.0332292745151985
summarybgmad13.312738418579102
summarybgmean47.264923095703125
summarybgmedian46.012290954589844
summarybgn2777299.0
summarybgp0527.510950660705564
summarybgp9571.43453521728516
summarybgstdv13.809713363647461
summarycsfk-0.26295680117931974
summarycsfmad146.07156372070312
summarycsfmean289.8341064453125
summarycsfmedian291.610595703125
summarycsfn12737.0
summarycsfp05111.39846343994141
summarycsfp95485.38677978515625
summarycsfstdv122.435302734375
summarygmk0.04547241649651568
summarygmmad57.58919906616211
summarygmmean602.7405395507812
summarygmmedian601.8649291992188
summarygmn41121.0
summarygmp05508.4110412597656
summarygmp95698.8953857421875
summarygmstdv57.94710922241211
summarywmk1.5023165719867944
summarywmmad48.449981689453125
summarywmmean986.1085205078125
summarywmmedian1000.0059814453125
summarywmn192486.0
summarywmp05831.1702423095703
summarywmp951074.0186767578125
summarywmstdv70.37769317626953
tpmoverlapcsf0.19485361874103546
tpmoverlapgm0.5110290050506592
tpmoverlapwm0.5083010792732239
wm2max0.614719678166579

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sume774cb43bdcec806588c0d652c41118c
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.